Expedited diagnosis of disseminated Mycobacterium kansasii infection using targeted (amplicon-based) next-generation sequencing in an immunocompromised patient

September 8, 2025
Case Report
Risa Fuller, Bruce E Petersen, Shafinaz Hussein, Christian Salib, Amy Duffield, Rebecca Gaglia, Janice L Gabrilove, Carolina Hernández, Juan David Ramirez, Samantha E Jacobs, Alberto Paniz-Mondolfi
Pathogen:Mycobacterium kansasii
Infection Type:Disseminated infection
Pathogen Type:Bacteria

Summary

A 59-year-old immunocompromised female with a history of renal cell carcinoma presented with fever, night sweats, and pancytopenia, suggesting disseminated infection. Initial conventional microbiological methods were slow and inconclusive. Targeted amplicon-based next-generation sequencing (NGS) of a bone marrow biopsy specimen rapidly identified Mycobacterium kansasii, leading to an expedited diagnosis of disseminated infection. This allowed for prompt initiation of appropriate anti-mycobacterial therapy, highlighting the critical role of advanced molecular diagnostics in managing complex infections in vulnerable patients.

Key note: Targeted NGS can significantly accelerate the diagnosis of disseminated atypical mycobacterial infections in immunocompromised patients, improving clinical outcomes.

DOI: 10.1128/asmcr.00110-24