Severe chronic UTI sustained by clinically undetected intracellular Escherichia coli in a pediatric patient

October 21, 2025
Case Report
Arthika Manoharan, Naveen Wijekoon, Greg Whiteley, Theerthankar Das Ashishkumar, Neftali Flores-Rodriguez, Slade O Jensen, Bill Söderström, Kate H Moore, Jim Manos, Ben J Marais, Aniruddh Deshpande
Pathogen:Escherichia coli
Infection Type:Urinary tract infection
Pathogen Type:Bacteria

Summary

A pediatric patient presented with severe chronic urinary tract infections (UTIs) that were difficult to treat. Despite standard diagnostic methods often showing negative results, the underlying cause was identified as intracellular bacterial communities (IBCs) of Escherichia coli within the urothelium. This case highlights how conventional urine cultures can fail to detect these hidden pathogens, leading to persistent symptoms and diagnostic challenges. The patient's long-term persistence of undetected intracellular E. coli underscores the need for advanced diagnostic techniques in recurrent or chronic UTIs, especially in pediatric populations, to guide effective treatment strategies and prevent complications.

Key note: Clinically undetected intracellular bacterial communities can sustain severe chronic infections despite negative standard cultures.

DOI: 10.1128/asmcr.00077-25